Table of Contents
Editorial/Commentary
A first special issue of Standards in Genomic Sciences from the Genomic Standards Consortium |
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| Dawn Field, Renzo Kottmann, Peter Sterk |
Community Dialog
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9 |
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| Tanja Davidsen, Ramana Madupu, Peter Sterk, Dawn Field, George M. Garrity, Jack Gilbert, Frank Oliver Glöckner, Lynette Hirschman, Eugene Kolker, Renzo Kottmann, Nikos C. Kyrpides, Folker Meyer, Norman Morrison, Lynn Schriml, Tatiana Tatusova, John Wooley |
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10 |
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| Elizabeth Glass, Folker Meyer, Jack Gilbert, Dawn Field, Sarah Hunter, Renzo Kottmann, Nikos C. Kyrpides, Susanna Sansone, Lynn Schriml, Peter Sterk, Owen White, John Wooley |
Meeting Report: “Metagenomics, Metadata and MetaAnalysis” (M3) at ISMB 2010 |
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| Dawn Field, Susanna Sansone, Edward F. DeLong, Peter Sterk, Iddo Friedberg, Renzo Kottmann, Lynette Hirschman, George M. Garrity, Guy Cochrane, John Wooley, Folker Meyer, Sarah Hunter, Owen White |
Meeting Report: GSC M5 Roundtable at the 13th International Society for Microbial Ecology Meeting in Seattle, WA, USA August 22-27, 2010 |
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| Jack Gilbert, Folker Meyer, Rob Knight, Dawn Field, Nikos C. Kyrpides, Pelin Yilmaz, John Wooley |
Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation |
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| Owen White, Nikos C. Kyrpides |
Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project |
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| Jack Gilbert, Folker Meyer, Dionysios A. Antonopoulos, Pavan Balaji, C. Titus Brown, Christopher T. Brown, Narayan Desai, Jonathan A. Eisen, Dirk Evers, Dawn Field, Wu Feng, Daniel Huson, Janet Jansson, Rob Knight, James Knight, Eugene Kolker, Kostas Konstantindis, Joel Kostka, Nikos C. Kyrpides, Rachel Mackelprang, Alice McHardy, Christopher Quince, Jeroen Raes, Alexander Sczyrba, Ashley Shade, Rick Stevens |
The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010. |
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| Jack Gilbert, Folker Meyer, Janet Jansson, Jeff Gordon, Norman Pace, James Tiedje, Ruth Ley, Noah Fierer, Dawn Field, Nikos C. Kyrpides, Frank Oliver Glöckner, Hans-Peter Klenk, K. Eric Wommack, Elizabeth Glass, Kathryn Docherty, Rachel Gallery, Rick Stevens, Rob Knight |
Meeting Report: BioSharing at ISMB 2010 |
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| Dawn Field, Susanna Sansone, Edward F. DeLong, Peter Sterk, Iddo Friedberg, Pascale Gaudet, Susanna Lewis, Renzo Kottmann, Lynette Hirschman, George M. Garrity, Guy Cochrane, John Wooley, Folker Meyer, Sarah Hunter, Owen White, Brian Bramlett, Susan Gregurick, Hilmar Lapp, Sandra Orchard, Philippe Rocca-Serra, Alan Ruttenberg, Nigam Shah, Chris Taylor, Anne Thessen |
Meeting Report from the Second “Minimum Information for Biological and Biomedical Investigations” (MIBBI) workshop |
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| Carsten Kettner, Dawn Field, Susanna Sansone, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Black, Cedrik M. Britten, Ario de Marco, Jennifer Fostel, Pascale Gaudet, Alejandra Gonzalez-Beltran, Nigel Hardy, Jan Hellmans, Hennin Hermjakob, Nick Juty, Jim Leebens-Mack, Eamonn Maguire, Steffen Neumann, Sandra Orchard, Helen Parkinson, William Piel, Shoba Ranganathan, Philippe Rocca-Serra, Annapaola Santarsiero, David Shotton, Peter Sterk, Andreas Untergasser, Patricia L. Whetzel |
Genome Report
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T) |
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| Olivier Duplex Djao, Xiaojing Zhang, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Galina Ovchinnikova, Amrita Pati, Evelyne Brambilla, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Johannes Sikorski, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk |
Complete genome sequence of Desulfarculus baarsii type strain (2st14T) |
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| Hui Sun, Stefan Spring, Alla Lapidus, Karen Davenport, Tijana Glavina Del Rio, Hope Tice, Matt Nolan, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, John C. Detter, Cliff Han, Manfred Rohde, Evelyne Brambilla, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Miriam Land |
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T) |
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| Sam Pitluck, Montri Yasawong, Brittany Held, Alla Lapidus, Matt Nolan, Alex Copeland, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Olga Chertkov, Lynne Goodwin, Roxanne Tapia, Cliff Han, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Rüdiger Pukall, Stefan Spring, Manfred Rohde, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk |
Complete genome sequence of Intrasporangium calvum type strain (7 KIPT) |
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| Tijana Glavina Del Rio, Olga Chertkov, Montri Yasawong, Susan Lucas, Shweta Deshpande, Jan-Fang Cheng, John C. Detter, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Rüdiger Pukall, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus |
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1T) |
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| Johannes Sikorski, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Evelyne Brambilla, Montri Yasawong, Manfred Rohde, Rüdiger Pukall, Stefan Spring, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk |
Complete genome sequence Methanothermus fervidus type strain (V24ST) |
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| Iain J. Anderson, Olivier Duplex Djao, Monica Misra, Olga Chertkov, Matt Nolan, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Evelyne Brambilla, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Johannes Sikorski, Stefan Spring, Manfred Rohde, Konrad Eichinger, Harald Huber, Reinhard Wirth, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk |
Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T) |
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| Hui Sun, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Olivier Duplex Djao, Manfred Rohde, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk |
Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT) |
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| Cliff Han, Wei Gu, Xiaojing Zhang, Alla Lapidus, Matt Nolan, Alex Copeland, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Susanne Schneider, Manfred Rohde, Markus Göker, Rüdiger Pukall, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, John C. Detter |
This work is licensed under a Creative Commons Attribution 3.0 License.
Acknowledgements
We would like to gratefully acknowledge the support of many members of the Genomic Standards Consortium, the broader genomic science community, and those who have indicated their willingness to serve as editors, reviewers and contributors.
Funding for SIGS is provided by a grant from the Office of the Vice President for Research and Graduate Studies at Michigan State University, the Michigan State University Foundation, and the US Department of Energy Biological and Environmental Research DE-FG02-08ER64707.
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